Physicochemical Characterization and Metabolites Identification of the Synthetic Cannabinoid MDMB-5′Br-PINACA Using In Silico and In Vitro Approaches
Campinas Poison Control Center, Universidade Estadual de Campinas (UNICAMP), Campinas, SP 13083-859, Brazil
School of Medical Sciences, Universidade Estadual de Campinas (UNICAMP), Campinas, SP 13083-859, Brazil
Faculty of Pharmaceutical Sciences, Universidade Estadual de Campinas (UNICAMP), Campinas, SP 13083-871, Brazil
Nova Analítica Imp. Exp. LTDA, Sao Paulo, SP 09941-202, Brazil
Abstract
MDMB-5′Br-PINACA is a recently identified brominated synthetic cannabinoid that was detected in herbal materials seized in Brazil in 2025, raising concerns regarding further potential intoxication cases. In this sense, the evaluation of physicochemical properties and metabolic fate may improve its analytical detectability. Therefore, an integrated in silico and in vitro approach was employed to investigate the physicochemical properties and phase I metabolism of MDMB-5′Br-PINACA. Physicochemical parameters and predicted metabolic pathways were first evaluated using BioTransformer 3.0 and XenoSite, providing complementary insights into likely sites of metabolism. In vitro metabolism was subsequently assessed using pooled human liver microsomes associated with liquid chromatography coupled to high-resolution mass spectrometry (LC-HRMS) analysis. MS2-based molecular networking (MN) was applied as an exploratory and confirmatory strategy to guide metabolite annotation by clustering structurally related features and prioritizing candidates linked to MDMB-5′Br-PINACA. A total of twenty-seven metabolites were level 2 annotated, encompassing aliphatic and aromatic hydroxylation, sequential alcohol oxidation to ketone, aldehyde, and carboxylic acid derivatives, ester hydrolysis, intramolecular lactone formation, and N-dealkylation with loss of the pentyl side chain. Hydroxylations of the pentyl chain and tert-butyl moiety and secondary oxidative reactions emerged as the predominant pathways under the experimental conditions, in agreement with in silico predictions. However, lactone formation was exclusively revealed by in vitro experiments, demonstrating limitations of current in silico prediction approaches. The integration of computational prediction, LC-HRMS, and MN substantially enhanced metabolite coverage and confidence of structural assignment. These findings provide a detailed metabolic map of MDMB-5′Br-PINACA and underscore the value of combining in silico and in vitro approaches to improve metabolite identification, supporting forensic and clinical investigations of intoxication involving this synthetic cannabinoid.
Article notes
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Received 2026 Feb 20; Accepted 2026 May 15; Revised 2026 May 8; Collection date 2026 Jun 15.
1.Introduction
Over the past decade, the emergence of New Psychoactive Substances (NPS) has challenged forensic science, clinical toxicology, and public health worldwide. These compounds are typically synthesized not only to mimic the psychoactive effects of controlled drugs but also to circumvent existing legislation through structural modifications. Among the NPS classes, synthetic cannabinoids (SCs) remain the most structurally diverse and dynamic group, accounting for a significant proportion of the novel drugs reported annually by international monitoring programs. , These molecules are commonly found in herbal smoking mixtures but have also been detected in e-liquids, tablets, and impregnated paper sheets. Their high affinity for the cannabinoid type 1 receptor (CB1R) often results in more pronounced psychoactive effects, exceeding those of Δ9-tetrahydrocannabinol (Δ9-THC) and contributing to severe and unpredictable toxicological outcomes. −
The continuous introduction of novel SC analogs is largely driven by legislative control, pushing clandestine laboratories to design chemically modified structures. As a result, these newly identified structures lack pharmacological and toxicological data. Halogenated derivatives, particularly brominated SCs, represent a smaller but noteworthy and more recent subgroup within this class. Halogen substitution may increase lipophilicity, blood–brain barrier permeability, receptor binding affinity, and metabolic stability, potentially altering their biological activity. , MDMB-5′Br-PINACA, a methyl ester analog structurally related to ADB-5′Br-PINACA, was identified for the first time in 2025, found in seized herbal materials in Brazil. To date, no experimental data are available regarding its physicochemical, metabolism, or toxicological properties.
Metabolism studies are essential for understanding NPS toxicity, as many of these compounds undergo extensive and rapid metabolism, yielding a wide range of metabolites. The detection of these metabolites is often essential for intoxication diagnosis, as many times the parent compound may be absent from biological specimens depending on the postexposure interval. Furthermore, certain metabolites can contribute to, or even be primarily responsible for, the observed toxic effects. Therefore, liver microsome assays are widely applied to predict metabolic stability, clearance, enzyme kinetics, and metabolic pathways, enabling interspecies comparison and supporting toxicological interpretation. Pooled human liver microsomes (pHLM) are commonly used to evaluate both qualitative and quantitative aspects of xenobiotic metabolism, providing a relevant in vitro model for the identification of human-specific metabolic pathways. Complementary in silico tools have significantly enhanced metabolite identification, allowing rapid and simple prediction of potential phase I and phase II metabolites prior to experimental work. ,
For a more comprehensive understanding of metabolites related to NPS metabolism, liquid chromatography coupled with high-resolution mass spectrometry (LC-HRMS) stands out as the most comprehensive analytical technique for this type of application. However, nontargeted LC-HRMS approaches generate a large volume of data and, consequently, forensic laboratories require appropriate software and specialized personnel for the efficient interpretation of this information. , In this context, molecular networking (MN) emerges as an innovative strategy that combines high-resolution mass spectrometry with advanced data processing to investigate metabolic pathways. −
Here, we provided an integrated characterization of MDMB-5′Br-PINACA by combining in silico prediction with in vitro phase I metabolism in pHLM followed by LC-HRMS analysis. We further applied MS2-based MN to systematically prioritize and annotate related metabolite features. Therefore, this work aimed to characterize physicochemical properties of this new SC, and to experimentally establish its phase I metabolic profile to support toxicological screening and interpretation.
2.Materials and Methods
2.1.Chemical and Reagents
LC-MS grade methanol and LC-MS grade water, acetonitrile, glucose-6-phosphate, magnesium chloride hexahydrate, sodium citrate tribasic dihydrate, β-nicotinamide adenine dinucleotide phosphate hydrate (NADP+), and pooled human liver microsomes (pHLM) at 20 mg/mL were purchased from Sigma-Aldrich (St. Louis, MI, USA). Ultrapure water was obtained using a Mili-Q RG system, Milipore (Burlington, MA, USA). Formic acid was acquired from Scharlab (Barcelona, Spain) and Gentest 0.5 M phosphate buffer pH 7.4, glucose-6-phosphate dehydrogenase from Corning (Woburn, MA, USA). Due to the absence of commercially available certified reference material, MDMB-5′Br-PINACA was obtained by purification of an herbal seized sample according to a method previously developed and described by our group, resulting in a limited amount of compound. Subsequently, MDMB-5′Br-PINACA was prepared as a stock solution at 2 mg/mL (4.58 mM). N-ethyl pentedrone (NEP) hydrochloride reference material, a positive control for the incubations, was acquired from Cayman Chemical (Ann Arbor, MI, USA) and a stock solution prepared at 1 mg/mL in methanol.
2.3.Microsomal Incubation
All incubations followed the good practices guideline for metabolism studies and were based on previously published studies from our group. , For phase I metabolite elucidation, 20 microliters of 4.58 mM MDMB-5′Br-PINACA were diluted into 780 μL of a NADPH-regenerating system (1.1 mM NADP+, 10 mM glucose-6-phosphate, 1 U/mL glucose-6-phosphate dehydrogenase, 5 mM sodium citrate and 66 mM magnesium chloride in 100 mM phosphate buffer, pH 7.4) in a 1.5 mL propylene tube. Aliquots of 100 μL were transferred to new tubes and preincubated for 5 min in an MTC 100 thermo shaker incubator (Miulab, Hangzhou, ZJ, China) at 300 rpm and 37 °C. Reactions were started by adding 100 μL of pHLM at 5 mg/mL into the preincubated shaking tubes (MDMB-5′Br-PINACA and microsomal protein final concentrations of 57.25 μM and 2.5 mg/mL, respectively). After 0, 30, and 60 min, metabolism reactions were interrupted by adding 400 μL ice-cold acetonitrile. The samples were mixed in a BenchMixer XL (Benchmark, NJ, USA) for 5 min and centrifuged at 12,000 × g for 15 min at 4 °C (Hettich Universal 320 R, Tuttlingen, BW, Germany). Finally, supernatants were transferred to vials (200 μL) and 10 μL was injected into a LC-HRMS system. Positive controls were prepared by incubating NEP under the same condition as MDMB-5′Br-PINACA (drug concentration of 57.25 μM and microsomal protein concentration of 2.5 mg/mL) to achieve the suitability of pHLM based on previous studies. Negative controls were also prepared by incubating the synthetic cannabinoid in buffer solution, in the absence of microsome, and cofactor solutions. All incubations were performed in a single replicate, as the objective of this study was qualitative metabolite profiling rather than quantitative assessment. Given the exploratory nature of this work, results are intended for qualitative/semiquantitative metabolite profiling rather than quantitative comparison. Furthermore, the limited availability of the purified compound also constrained the number of replicates performed.
2.5.LC-HRMS Data Analysis and Interpretation
To describe and characterize MDMB-5′Br-PINACA and its metabolites incubated in pHLM, all acquired chromatograms and mass spectra were analyzed using Compound Discoverer software version 3.4 (Thermo Scientific, Bremen, Germany). Initially, the raw (.RAW) files were imported into the software, and chromatographic alignment across samples was performed as the initial step of the workflow. This step corrected retention time variations between analytical runs and ensured consistent feature matching across the entire data set. After alignment, feature detection was carried out from MS1 data through extracted ion chromatograms (XICs), using a maximum mass tolerance of 5 ppm for MS1. Next, the detected features underwent empirical minimal formula prediction based on accurate mass, isotopic pattern, and elemental constraints defined within the workflow. Subsequently, the software grouped related signals and removed redundant data, consolidating adducts, isotopologues, and in-source fragments into a single putative compound. The presence of these features was evaluated across all aligned samples, which ensured proper assessment of compounds detected in individual samples. This process generated a final matrix of aligned and comparable features suitable for interpretative analyses. Finally, MS2 data associated with each feature supported spectral similarity analyses and enabled construction of MS2-based MN. In this approach, fragmentation spectra with similar patterns formed network connections that reflected structural relationships among compounds. Visualization of the molecular network facilitated identification of related compounds and potential metabolites. Metabolite identification was performed according to widely accepted metabolomics guidelines, corresponding to level 2 annotation - putatively annotated compounds. Structural proposals were based on high-resolution accurate mass measurements, isotopic pattern, and MS2 fragmentation data. Since authentic reference standards for the detected metabolites are not yet commercially available, it was not possible to match retention times. Therefore, definitive structural confirmation (level 1) was not achieved. To ensure confidence in the proposed annotations, strict criteria were applied, including mass errors below 5 ppm for precursor ions and below 10 ppm for fragment ions, as well as the presence of at least two consistent and structurally informative product ions in the MS2 spectra. Despite these measures, the exact positions of metabolic modifications, particularly in the case of positional isomers, should be considered as tentative. The percentages of metabolite formation in pHLM (metabolites relative area) were calculated using each metabolite absolute area of the chromatographic peaks normalized by the summed area of all detected metabolites.
3.Results and Discussion
3.1.In Silico Prediction of MDMB-5′Br-PINACA Physicochemical Properties
Exploratory physicochemical and pharmacokinetic properties of MDMB-5′Br-PINACA, predicted based on its molecular structure were summarized in Figure . Based on SwissADME in silico analysis, MDMB-5′Br-PINACA displayed physicochemical properties consistent with high drug-like potential. The compound showed a topological polar surface area (TPSA) of 73.22 Å2, with four hydrogen bond acceptors and one hydrogen bond donor, parameters generally associated with passive membrane permeability. Lipophilicity values showed consensus logP of 4.17 (ranging from 3.18 to 5.28 across different models). Water solubility predictions indicated low solubility (−5.47 for ESOL, – 6.57 for Ali, and – 6.17 for SILICOS-IT models). The moderate TPSA and balanced hydrogen-bonding capacity favor membrane permeability, while the high consensus logP value is consistent with strong lipophilicity, facilitating BBB penetration. Notably, the compound is not expected to be a substrate of P-gp, which suggests reduced susceptibility to active efflux from the central nervous system (CNS), thereby enhancing brain exposure. This characteristic may contribute to a more pronounced psychoactive profile, potentially enhancing brain exposure and warranting further investigation of neurotoxicity.
Furthermore, assessing ADME parameters is essential to early drug research and toxicological investigations. Pharmacokinetic predicted parameters suggested high gastrointestinal absorption and the ability to cross the BBB, with no evidence of being a P-gp substrate. The compound was predicted to inhibit CYP1A2, CYP2C19, CYP2C9, and CYP3A4, but not CYP2D6. This data highlights the potential for drug–drug interactions, which is clinically relevant considering the frequent coadministration of several psychoactive substances. Previous work demonstrated important drug–drug interactions associated with other SC, such as JWH-073 and JWH-018. Additionally, the bioavailability provided by the Abbott Bioavailability Score was estimated at 0.55. The low aqueous solubility predicted by multiple models may limit oral bioavailability and contribute to variable absorption, although the bioavailability score indicates a moderate probability of systemic distribution upon ingestion.
Regarding druglikeness, the compound satisfied the Lipinski, Ghose, Veber, and Egan rules, but showed one violation of the Muegge filter (XLOGP 3 > 5). Leadlikeness filters indicated three violations (MW > 350, rotatable bonds >7, and XLOGP 3 > 3.5). No PAINS or Brenk alerts were detected, and the synthetic accessibility score was considered from low to moderate (3.45). The absence of multiple violations in druglikeness and medicinal chemistry filters suggests that MDMB-5′Br-PINACA retains structural characteristics associated with favorable pharmacokinetics, such as adequate absorption and metabolic stability. , In the context of NPS, these features may also imply a prolonged duration of action and an enhanced ability to reach effective concentrations in the CNS.
Additionally, in silico analysis predicted moderate synthetic accessibility of MDMB-5′Br-PINACA, as it aligns with recent reports emphasizing the ease with which new SCRA analogues can be generated through minor structural modifications. , Indeed, MDMB-5′Br-PINACA has been highlighted as a potential emerging cannabinoid due to its straightforward synthesis and the combinatorial possibilities of precursor substitution. This synthetic feasibility lowers the threshold for clandestine production and accelerates the introduction of novel compounds into the drug market, reinforcing the need for proactive monitoring and toxicological characterization to anticipate its potential emergence.
Altogether, the predicted physicochemical and pharmacokinetic profile of MDMB-5′Br-PINACA supports its potential for central activity, in agreement with previously reported synthetic cannabinoids. , Overall, these in silico predictions should be considered an initial and exploratory assessment aimed at providing complementary information on MDMB-5′Br-PINACA, an emerging SCRA recently described in the literature. Although computational tools such as SwissADME offer valuable insights into physicochemical behavior and pharmacokinetic tendencies, they do not replace experimental evidence, but rather support hypothesis generation and early risk assessment.
4.Conclusions
This study provides a comprehensive characterization of the phase I metabolism of MDMB-5′Br-PINACA using an integrated in silico and in vitro strategy supported by LC-HRMS and MN. Twenty-seven metabolites were annotated with level 2 of confidence, highlighting an extensive metabolic liability of this SC, with oxidative transformations of the pentyl side chain and tert-butyl moiety representing the predominant pathways. Importantly, ester hydrolysis, secondary alcohol oxidations, intramolecular lactone formation, and N-dealkylation with loss of the pentyl chain further expand the metabolic landscape, generating structurally diverse metabolites that may serve as potential analytical targets for toxicological screening, although their in vivo persistence and toxicological relevance require further investigation. Comparison between computational predictions and experimental findings demonstrated substantial concordance for primary oxidative reactions, while also revealing metabolic routes not anticipated by in silico models alone, emphasizing the indispensability of experimental validation. MN proved to be a powerful auxiliary tool, enabling efficient prioritization of metabolite-related features, visualization of structural relationships, and improved confidence in metabolite annotation. From a forensic and clinical toxicology perspective, the metabolites identified in this study may represent relevant analytical targets for the detection of MDMB-5′Br-PINACA exposure, particularly in cases where the parent compound is no longer detectable and may also contribute to the overall toxicological profile of this compound. More broadly, this work illustrates how the combined application of in silico prediction, in vitro pHLM studies, and MN can substantially enhance metabolite elucidation and should be considered a robust framework for the investigation of emerging synthetic cannabinoids and other new psychoactive substances.
Overall, these findings support ongoing toxicological surveillance of emerging halogenated synthetic cannabinoids and highlight the importance of further studies addressing the biological activity and toxicological relevance of their metabolites, while reinforcing the value of combining in silico predictions with in vitro metabolism approaches for the rapid characterization of newly identified psychoactive substances.
Supplementary Material
Acknowledgments
This research was funded by Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (INSPEQT 2.0 Project-Grant Number: 2/2024), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Brazil (Grant numbers: 315640/2021-9; 309124/2025-5; INCT-SP 406958/2022-0), and Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) [Grant numbers: 2021/15172-8 (A.B.G. fellowship); 2024/15262-5].
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All data presented in this study are available in this article.
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The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.chemrestox.6c00107.
- MS1-mass spectra of MDMB-5′Br-PINACA metabolites considering phase I metabolism in pooled human liver microsomes (pHLM) by LC-HRMS using electrospray ionization in positive mode (ESI+); MS2-mass spectra of MDMB-5′Br-PINACA metabolites considering phase I metabolism in pooled human liver microsomes (pHLM) by LC-HRMS using electrospray ionization in positive mode (ESI+ (PDF)
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Conceptualization, A.B.G., N.J.A., and J.L.C.; methodology, A.B.G., N.J.A., J.C.C.S., and J.L.C.; formal analysis, A.B.G., N.J.A., J.C.C.S., and J.L.C.; investigation, A.B.G., N.J.A., J.C.C.S.; resources, A.B.G. and J.L.C.; data curation, A.B.G., N.J.A., J.C.C.S., G.C., and T.F.DC. writingoriginal draft preparation, A.B.G., and N.J.A.; writingreview and editing, A.B.G., N.J.A., J.C.C.S., G.C., T.F.DC.and J.L.C.; visualization, A.B.G., J.C.C.S., G.G., T.F.DC.and N.J.A.; supervision, J.L.C.; project administration, A.B.G.; funding acquisition, A.B.G. and J.L.C. All authors have read and agreed to the published version of the manuscript.
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The Article Processing Charge for the publication of this research was funded by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES), Brazil (ROR identifier: 00x0ma614).
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The authors declare no competing financial interest.
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Associated Data
Supplementary Materials
Data Availability Statement
All data presented in this study are available in this article.