Nepeta cataria L. (catnip) can serve as a chassis for the engineering of secondary metabolic pathways
Plant Biotechnology and Metabolic Engineering, Technical University of Darmstadt, Schnittspahnstraße 4, 64287 Darmstadt, Germany
Centre for Synthetic Biology, Technical University of Darmstadt, Darmstadt, Germany
Present Address: Invizyne Technologies Inc, 750 Royal Oaks Drive, Monrovia, CA 91016 USA
Abstract
Objective
Evaluation of Nepeta cataria as a host with specific endogenous metabolite background for transient expression and metabolic engineering of secondary biosynthetic sequences.
Results
The reporter gene gfp::licBM3 as well as three biosynthetic genes leading to the formation of the cannabinoid precursor olivetolic acid were adopted to the modular cloning standard GoldenBraid, transiently expressed in two chemotypes of N. cataria and compared to Nicotiana benthamiana. To estimate the expression efficiency in both hosts, quantification of the reporter activity was carried out with a sensitive and specific lichenase assay. While N. benthamiana exhibited lichenase activity of 676 ± 94 μmol g−1 s−1, N. cataria cultivar ‘1000’, and the cultivar ‘Citriodora’ showed an activity of 37 ± 8 μmol g−1 s−1 and 18 ± 4 μmol g−1 s−1, respectively. Further, combinatorial expression of genes involved in cannabinoid biosynthetic pathway acyl-activating enzyme 1 (aae1), olivetol synthase (ols) and olivetolic acid cyclase (oac) in N. cataria cv. resulted presumably in the in vivo production of olivetolic acid glycosides.
Conclusion
Nepeta cataria is amenable to Agrobacterium-mediated transient expression and could serve as a novel chassis for the engineering of secondary metabolic pathways and transient evaluation of heterologous genes.
Supplementary Information
The online version contains supplementary material available at 10.1007/s10529-024-03489-w.
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Keywords: Cannabinoids, Modular cloning, Nepeta cataria, Plant metabolic engineering, Transient expression platform
Article notes
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Received 2023 Mar 2; Revised 2024 Jan 8; Accepted 2024 Apr 14; Issue date 2024.
Introduction
Engineering of metabolic pathways in alternative hosts holds a promising strategy to improve the production of valuable secondary metabolites or to generate new-to-nature compounds (Luo et al. 2015). Nicotiana benthamiana Domin has become both a model system and working horse for transient gene expression toward recombinant protein production as well as a platform for enzymatic pathway assembly and metabolite production (Bally et al. 2018). This fact also makes N. benthamiana an ideal exploration tool to develop novel metabolic engineering strategies, evaluate enzymatic cascades, and enable the fast and reliable testing of genetic constructs prior to a time-consuming stable transformation.
Although N. benthamiana has successfully been deployed to host complex metabolic routes and produce natural products of interest (Grzech et al. 2023) it has some limitations. Unintended glycosylation of pathway intermediates or end products (Gülck et al. 2020) or proteolysis of recombinant proteins (Grosse-Holz et al. 2017) has been described, which are an obstacle for high yields of any given product demanding complex and intensive engineering of the host genome (Dudley et al. 2022). Another factor that might limit the capacity of N. benthamiana is precursor supply, necessary for fueling the pipeline leading to secondary metabolites. The assembly of these specialized compounds rely on the supply of building blocks deviated from primary metabolism, and this is especially true for natural products containing terpenoid moieties within their structures, like monoterpenoid indole alkaloids (Geissler et al. 2016) or terpenophenolics (Schachtsiek et al. 2017). Hence, a strong endogenous supply of precursors like isopentenyl diphosphate (IPP) or geranyl diphosphate (GPP) in the heterologous host plant might be an advantage for the formation of novel metabolites. Moreover, sequestration and storage of newly produced metabolites seems to be a crucial aspect of high-level metabolite formation in host organisms. Especially glandular trichomes fulfill the role of specialized organs optimized to produce and store extreme amounts of natural products incompatible with the aqueous environment within a cell (Huchelmann et al. 2017).
Considering the reasons mentioned above, we identified Nepeta cataria L. (catnip) as a potential host plant for metabolic engineering efforts because of its chemotypes, rich in terpenoid constituents (nepetalactones and iridoids or citral derivatives (Said-Al Ahl et al. 2018)), and well-developed trichome system for the storage and secretion of the volatile components of essential oils. Hence, N. cataria could serve as a host for enzymatic routes relying on the terpenoid precursors. An important example of such a route is cannabinoid metabolic pathway, involving the integration of polyketides and terpene metabolites derived from the methylerythritol 4-phosphate pathway (Fellermeier et al. 2001; Gülk and Möller 2020; Supplementary Fig. 1).
Here we evaluate two chemotypes of N. cataria for their suitability for transient expression of heterologous genes, involved in a polyketide branch of cannabinoid biosynthesis, and accumulation of cannabinoid intermediates.
Materials and methods
Chemicals
Nerol, β-citronellol, geraniol and citral, used as authentic standards in GC–MS analysis, were procured from Sigma-Aldrich (St. Louis, MO, USA). Olivetolic acid (OA; Santa Cruz Biotechnology, Heidelberg, Germany) served as an authentic standard as well as a substrate in supplementation experiments. Hexanoic acid, used as precursor supply, was purchased from Carl Roth (Karlsruhe, Germany).
Bacterial strains and growth conditions
Escherichia coli TOP10 cells (Thermo Fisher Scientific, Waltham, USA), used for cloning, and Agrobacterium tumefaciens strain EHA105 and GV3101, applied in transient expression experiments, were maintained as described in Fräbel et al. (2016).
Cloning of DNA
To generate the genetic constructs used for transient transformation of N. cataria and N. benthamiana plants, restriction-ligation reactions were set up as reported by Sarrion-Perdigones et al. (2013). The domestication of aae1 (GenBank AFD33345.1), ols (GenBank AB164375.1) and oac (GenBank AFN42527.1), as well as the generation of A. tumefaciens EHA105 and GV3101 for transformation of plants is described in more detail in the supporting information. The constructs were assembled the way as described by Fräbel et al. (2016) utilizing the cauliflower mosaic virus 35S promoter (P35S) and the nopaline synthase terminator (TNos) for regulation of gene expression.
As a bifunctional reporter, we utilized an optimized version of licBM3 gene from Clostridium thermocellum (Ruminiclostridium thermocellum), coding for thermostable lichenase, in translational fusion with a synthetic GFP gene (NCBI acc. no KX458181; Gerasymenko et al. 2017).
Transient transformation of plants
All plants were grown in the greenhouse at 21 ± 2° C under 70% humidity and 16 h of illumination. Transient transformation of N. cataria and N. benthamiana plants was performed as previously described (Geissler et al. 2018). For reconstruction of the OA biosynthetic pathway, plants were additionally injected with 4 mM of hexanoic acid (solved in infiltration buffer (10 mM MES, 10 mM MgSO4) four days after initial infiltration with agrobacteria harboring aae1, ols and oac and harvested after 24 h of incubation.
Determination of lichenase activity
GC–MS analysis of volatile compounds
For the analysis of volatiles accumulated in N. cataria plant material, the compounds were extracted with dichloromethane (DCM, Carl Roth, Karlsruhe, Germany) and the obtained samples measured by GC–MS using a DB-5MS column (30 m, 0.25 mm ID, 0.25 μm film thickness; Phenomenex, Aschaffenburg, Germany). Detailed parameters of sample preparation and GC–MS analysis are specified in the supplementary data.
Results and discussion
Agrobacterium-mediated transient transformation of N. cataria plants
In the first step, we wanted to evaluate the amenability of catnip to the infiltration with an Agrobacterium suspension. Secondly, heterologous gene expression needs to be verified by fluorescence microscopy and by enzymatic assay of lichenase activity. The upper six leaves of four-week-old plants were grouped in pairs according to the nodes from which they emerged. Plants were infiltrated either with A. tumefaciens (strain GV3101) or with the same strain harbouring the GFP::LicBM3 expression construct, providing a fusion of the gfp gene for fluorescence readout and the licBM3 gene encoding the enzyme lichenase (Supplementary Fig. 2) whose activity can be quantified after successful expression (Supplementary Fig. 3a). Additionally, a transcriptional unit harbouring the p19 protein to avoid post-transcriptional gene silencing was included in the vector. After seven days of incubation, all plants displayed barely any necrosis compared to non-infiltrated leaves (Supplementary Fig. 3b and c). Under UV light, an easily visible fluorescence could be observed in plants transformed with GV3101 carrying the GFP::LicBM3 expression construct (Supplementary Fig. 4). Since the transient transformation of N. cataria plants visually proved possible, a quantitative analysis of transformation efficiency was performed next. Lichenase activity was measurable in all three leaf pairs of both chemovars with 37 ± 8 μmol g−1 s−1 for the second leaf pair of N. cataria ‘1000’, and 18 ± 4 μmol g−1 s−1 activity in the first, and thus youngest, leaf pair of N. cataria ‘Citriodora’ (Fig. 1). Activity differed between leaves, but the difference was, however, not significant. For comparison, we took the data of N. benthamiana, four-week-old plants transformed with the same construct (Gerasymenko et al. 2019), where lichenase activity is most pronounced in the second to third upper leaves (650 ± 65 and 676 ± 94 μmol g−1 s−1, respectively, Fig. 1).
Although the expression level of the reporter protein in N. benthamiana was considerably higher compared to N. cataria, the general infiltration approach proved viable for both tested N. cataria varieties providing a detectable yield of the reporter protein. It cannot be excluded that other developmental stages of the plants could be more optimal concerning the expression levels since plant senescence alters gene expression and the endogenous phytohormone balance, which may influence susceptibility to viral/bacterial infection (Buchanan-Wollaston et al. 2005). Given the fact that older leaves were less amenable to the infiltration procedure and that the initial results confirmed the potential of catnip for rapid testing of genetic sequences for metabolite production, we continued with the established protocol.
Characterization of chemotypes within the different N. cataria cultivars
The Nepeta genus has been the subject of extensive research and studies on their phytochemical variations led to the definition of two main catnip chemotypes. One, with nepetalactones as the dominant compounds, and another with citral derivatives as major constituents (Said-Al Ahl et al. 2018). To evaluate the effect of the endogenous metabolic background on any heterologous pathway being introduced it was necessary to characterize the two utilized cultivars regarding their chemical profiles. Therefore, volatile compounds were extracted from the two studied N. cataria cultivars and analyzed by GC–MS. The results revealed two distinct chemotypes. The cultivar ‘Citriodora’ consisted exclusively of chemotype 1, containing citral derivatives like citronellol, neral, geraniol and geranial, while N. cataria cultivar ‘1000’ consisted exclusively of chemotype 2 containing diastereomers of nepetalactone in different proportions (Fig. 2).
Supplementary Information
Below is the link to the electronic supplementary material.
Acknowledgments
Supporting information
Supplementary Fig. 1 Schematic description of the cannabinoid biosynthesis pathway in Cannabis sativa. MEP, 2-C-methyl-D-erythritol-4-phosphate pathway; AAE1, acyl activating enzyme 1; OLS, olivetol synthase; OAC, olivetolic acid cyclase; CBGAS, cannabigerolic acid synthase; THCAS, Δ9-tetrahydrocannabinolic acid synthase; CBDAS, cannabidiolic acid synthase; CBCAS, cannabichromenic acid synthase.
Supplementary Fig. 2—Schematic representation of the generated constructs within the GoldenBraid grammar (Sarrion-Perdigones et al. 2013). The capital letters show the four − nucleotide overhangs ensuring correct final orientation within the transcriptional unit (TU), while the numbers above the scheme represent standard GoldenBraid classes within the TU structure. P35S ATG, cauliflower mosaic virus (CaMV) 35S promoter with an integrated start codon ensuring cytosolic localization; TNos, nopaline synthase terminator; 8 × his:TNos, nopaline synthase terminator comprising an 8 × his-tag; aae1, acyl-activating enzyme 1; ols, olivetol synthase; oac, olivetolic acid cyclase; gfp::licBM3, lichenase in translational fusion to a synthetic GFP. Abbreviation of each construct is listed on the right. Boxes are not drawn to scale.
Supplementary Fig. 3 (a) Infiltration scheme of the upper six leaves (1a, 1b, 2a, 2b, 3a, 3b) of four-week-old N. cataria plants. (b) The infiltrated leaves showed very little necrosis at seven dpi compared to non-infiltrated leaves (c).
Supplementary Fig. 4 Fluorescence microscopy of N. cataria variety ‘Citriodora’ and ‘1000’ and N. benthamiana plants expressing gfp::licBM3 + P19. Infiltration of plants with untransformed Agrobacterium served as a negative control (C).
Funding
Open Access funding enabled and organized by Projekt DEAL.
Footnotes
Footnote Group
References
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References
- Bally J, Jung H, Kayser O, Mortimer C, Naim F, Philips JG, Hellens R, Bombarely A, Goodin MM, Waterhouse PM (2018) The rise and rise of nicotiana benthamiana: a plant for all reasons. Annu Rev Phytopathol 25(56):405–426
- Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ (2005) Comparative transcriptome analysis reveals significant differences in gene expression and signaling pathways between developmental and dark/starvation induced senescence in Arabidopsis. Plant J 42:567–585
- Dudley QM, Jo S, Guerrero DAS, Chhetry M, Smedley MA, Harwood WA, Sherden NH, O’Connor SE, Caputi L, Patron NJ (2022) Reconstitution of monoterpene indole alkaloid biosynthesis in genome engineered Nicotiana benthamiana. Comm Biol 5:949
- Fellermeier M, Eisenreich W, Bacher A, Zenk MH (2001) Biosynthesis of cannabinoids incorporation experiments with 13C-labeled glucoses. Eur J Biochem 268(6):1596–1604
- Fräbel S, Krischke M, Staniek A, Warzecha H (2016) Recombinant flavin-dependent halogenases are functional in tobacco chloroplasts without co-expression of flavin reductase genes. Biotechnol J 11(12):1586–1594
- Geissler M, Burghard M, Volk J, Staniek A, Warzecha H (2016) A novel cinnamyl alcohol dehydrogenase (CAD)-like reductase contributes to the structural diversity of monoterpenoid indole alkaloids in Rauvolfia. Planta 243(3):813–824
- Geissler M, Volk J, Stehle F, Kayser O, Warzecha H (2018) Subcellular localization defines modification and production of Δ9-tetrahydrocannabinolic acid synthase in transiently transformed Nicotiana benthamiana. Biotechnol Lett 40(6):981–987
- Gerasymenko IM, Sheludko YV (2017) Synthetic cold-inducible promoter enhances recombinant protein accumulation during Agrobacterium-mediated transient expression in Nicotiana excelsior at chilling temperatures. Biotechnol Lett 39(7):1059–1067
- Gerasymenko I, Sheludko Y, Frabel S, Staniek A, Warzecha H (2019) Combinatorial biosynthesis of small molecules in plants: engineering strategies and tools. Methods Enzymol 617:413–442
- Gülck T, Møller BL (2020) Phytocannabinoids: origins and Biosynthesis. Trends Plant Sci 25(10):985–1004
- Gülck T, Booth JK, Carvalho Â, Khakimov B, Crocoll B, Motawia MS, Møller BL, Bohlmann J, Gallage NJ (2020) Synthetic biology of cannabinoids and cannabinoid glucosides in Nicotiana benthamiana and Saccharomyces cerevisiae. J Nat Prod 83(10):2877–2893
- Grosse-Holz F, Kelly S, Blaskowski S, Kaschani F, Kaiser M, van der Hoorn RAL (2017) The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire. Plant Biotechnol J 16(5):1068–1084
- Grzech D, Hong B, Caputi L, Sonawane PD, O’Connor SE (2023) Engineering the biosynthesis of late-stage vinblastine precursors precondylocarpine acetate, catharanthine, tabersonine in Nicotiana benthamiana. ACS Synth Biol 12:27–34
- Huchelmann A, Boutry M, Hachez C (2017) Plant glandular trichomes: natural cell factories of high biotechnological interest. Plant Physiol 175(1):6–22
- Lai H, He J, Engle M, Diamond MS, Chen Q (2012) Robust production of virus-like particles and monoclonal antibodies with geminiviral replicon vectors in lettuce. Plant Biotechnol J 10(1):95–104
- Luo Y, Li B-Z, Liu D, Zhang L, Chen Y, Jia B, Zeng B-X, Zhao H, Yuan Y-J (2015) Engineered biosynthesis of natural products in heterologous hosts. Chem Soc Rev 44(15):5265–5290
- Said-Al Ahl H, Naguib NY, Hussein MS (2018) Evaluation growth and essential oil content of catmint and lemon catnip plants as new cultivated medicinal plants in Egypt. Ann Agric Sci 63(2):201–205
- Sarrion-Perdigones A, Vazquez-Vilar M, Palaci J, Castelijns B, Forment J, Ziarsolo P, Blanca J, Granell A, Orzaez D (2013) GoldenBraid 2.0: a comprehensive DNA assembly framework for plant synthetic biology. Plant Physiol 162(3):1618–1631
- Schachtsiek J, Warzecha H, Kayser O, Stehle F (2017) Current perspectives on biotechnological cannabinoid production in plants. Planta Med 84(4):214–220
- Sirikantaramas S, Taura F, Tanaka Y, Ishikawa Y, Morimoto S, Shoyama Y (2005) Tetrahydrocannabinolic acid synthase, the enzyme controlling marijuana psychoactivity, is secreted into the storage cavity of glandular trichomes. Plant Cell Physiol 46(9):1578–1582