Metabolomic profiling identifies complex lipid species associated with response to weight loss interventions
1Duke Molecular Physiology Institute, Duke University, Durham, NC 27701, USA
2Metabolomics Platform, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
3Division of Cardiovascular Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA
4Duke Clinical Research Institute, Duke University, Durham, NC 27701, USA
5Columbia University Irving Medical Center, New York, NY 10032, USA
6Department of Medicine, Duke University Medical Center, Durham, NC 27710, USA
#Corresponding author: Svati H. Shah, MD, Duke Molecular Physiology Institute, 300 N Duke St, Box 104775, Durham, NC 27701, svati.shah@duke.eduAbstract
Obesity is an epidemic internationally. While weight loss interventions are efficacious, they are compounded by heterogeneity with regards to clinically relevant metabolic responses. Thus, we sought to identify metabolic pathways and biomarkers that distinguish individuals with obesity who would most benefit from a given type of intervention. Liquid chromatography mass spectrometry-based profiling was used to measure 765 metabolites in baseline plasma from three different weight loss studies: WLM (behavioral intervention, N=443), STRRIDE-PD (exercise trial, N=163), and CBD (surgical cohort, N=125). The primary outcome was percent change in insulin resistance (as measured by the Homeostatic Model Assessment of Insulin Resistance [%ΔHOMA-IR]) over the intervention. Overall, 92 individual metabolites were associated with %ΔHOMA-IR after adjustment for multiple comparisons. Concordantly, the most significant metabolites were triacylglycerols (TAGs; p=2.3e-5) and diacylglycerols (DAGs; p=1.6e-4), with higher TAG and DAG levels associated with a greater improvement in HOMA-IR. In tests of heterogeneity, 50 metabolites changed differently between weight loss interventions; we found amino acids, peptides, and their analogues to be most significant (4.7e-3) in this category. Our results highlight novel metabolic pathways associated with heterogeneity in response to weight loss interventions, and related biomarkers which could be used in future studies of personalized approaches to weight loss interventions.
Introduction
Obesity is a major epidemic in the developed world and is an increasing problem in developing countries, with a range of consequences including dyslipidemia, hypertension, cardiovascular disease (CVD), stroke, type 2 diabetes mellitus (T2DM), and overall mortality.[1–4] In the United States, one third of adults are obese and approximately 300,000 deaths are attributed to obesity every year.[5,6] Behavioral, pharmacologic, exercise, dietary, and surgical intervention methods have been attempted to curb the obesity epidemic. Ideally, these interventions would be effective in all adults equally; however even when accounting for the amount of weight loss, individuals show heterogeneity in improvement in obesity-related co-morbidities and CVD risk factors.[7] Further, compliance with obesity intervention protocols is low unless expensive and protracted intervention programs run by a trained interventionist are employed. Surgical obesity interventions can partially overcome compliance issues; however, these are costly, can have short- and long-term complications, and are characterized by frequent weight regain. In recognition of these issues, the American Heart Association (AHA), the American College of Cardiology (ACC), and The Obesity Society (TOS) released a call for researchers to focus on determining the “the best approach to identify and engage those who can benefit from weight loss”.[8]
Blood-based biomarkers, by serving as more granular snapshots into an individual’s unique biochemistry, could distinguish individuals who would benefit the most from surgical interventions from those who can benefit from lower cost, less-invasive solutions. Our previous work has demonstrated a clear disconnect between amount of weight loss during lifestyle obesity interventions and improvement in insulin resistance[9], as well as marked inter-individual heterogeneity in amount of weight loss and metabolic responses to a given weight loss intervention. In this study, we investigate an omics-driven personalized approaches to understanding the molecular mechanisms of obesity and identifying biomarkers of response among diverse weight loss interventions including behavioral, exercise and surgical interventions.
Methods
Study Populations and Study approval
The WLM cohort has been described previously[10] (NCT00054925); all participants provided written consent. Approval from the Duke University Institutional Review Board was given. Notably, overweight or obese adults with hypertension, dyslipidemia, or both were recruited from clinical research centers at Duke University, Johns Hopkins University, Pennington Biomedical Research Center, or the Kaiser Permanente Center for Health Research between 2003 and 2009. This study only involves samples collected during phase 1 of the WLM intervention in which all participants were involved in a group-based behavioral intervention. A trained interventionist led 20 weekly group sessions with the goals for participants to reach 180 minutes per week of moderate physical activity (e.g., walking), reduce caloric intake, adopt the Dietary Approaches to Stop Hypertension (DASH) dietary pattern, and lose approximately ~0.5-1 kg per week. DASH was chosen because it reduces CVD risk factors.[11–16] Only participants who lost at least 4 kg during the 6-month weight loss program were considered for this study. Relevant for this study, blood plasma was drawn at baseline and 6-month follow-up, which we used for non-targeted metabolomics.
The STRRIDE-PD study[17,18] (NCT00962962) compared three 6-month exercise-only groups between 2009 and 2013; differing in amount or intensity to a fourth lifestyle intervention group: diet plus exercise similar to the first 6-months of the Diabetes Prevention Program (DPP). All participants in STRRIDE-PD provided written consent and approval from the Duke University Institutional Review Board was given. Sedentary, moderately overweight/obese (25 < BMI < 35 kg/m2), nonsmoking adults between the ages of 45 and 75 years with prediabetes, but no history of diabetes mellitus (T2DM) or CVD, were randomly assigned to one of four groups. The STRRIDE-PD study defined prediabetes as high-normal to impaired fasting glucose (95-125 mg/dL). The four groups were: 1) low-amount/moderate-intensity exercise; 2) high-amount/moderate-intensity exercise; 3) high-amount/vigorous-intensity exercise; 4) diet and exercise clinical lifestyle intervention. Relevant for this study, the blood plasma which we used for non-targeted metabolomics was drawn at baseline and 6-month follow-up.
The CBD cohort was a surgical weight loss cohort of individuals who underwent either Roux-en-Y gastric bypass surgery (RYGB) or adjustable gastric banding surgery (AGB) at St Luke’s Roosevelt Hospital Center between 2006 and 2014. All participants signed a consent form prior to engaging in various research studies aiming to identify changes in gut hormones and metabolism after bariatric surgery (NCT01516320, NCT02287285, NCT02929212, NCT00571220) [19–23]. Approval from the Columbia University Institutional Review Board was given. As such, each participant had fasting blood plasma drawn at baseline, with body weight and HOMA-IR measured at multiple follow-up visits up to a year.
Statistical analysis
Percent change in Homeostatic Model Assessment of Insulin Resistance (HOMA-IR) over the intervention time period is the outcome used to represent metabolic health for this study. HOMA-IR is calculated from clinically determined blood glucose and insulin levels as previously described.[10,11] Individuals were excluded if HOMA-IR percent change was implausible, i.e., greater than five standard deviations from the cohort mean (N=2 removed). Metabolites measured at baseline in blood plasma by LC-MS are in the form of the natural log of the MS peak’s area under the curve (AUC). The primary study was association of baseline metabolites with percent change in HOMA-IR over the obesity intervention time period. The secondary study was of heterogeneity between cohorts in the primary study.
Within cohort analysis
Two statistical analyses were performed for this study within each of the three cohorts. 1) A univariate linear association model between percent change of HOMA-IR and baseline metabolite, in order to find metabolites that effect HOMA-IR. 2) The same model as before with the addition of covariates for age, sex, race, baseline clinical triglycerides, and percent change in weight over the follow-up time period in order to determine if the individual metabolite effects HOMA-IR independent of traditional clinical measures known to be associated with insulin resistance.
Results
Study Populations
This study includes three intervention study cohorts: Weight Loss Maintenance (WLM) cohort, Studies of Targeted Risk Reduction Interventions through Defined Exercise in individuals with Pre-Diabetes (STRRIDE-PD), and Columbia Bariatric and Diabetes (CBD) cohort. Table 1 describes the demographics of these three cohorts.
Unless otherwise stated, measures are at baseline timepoint. AA: African American. EA: European Ancestry. BMI: body mass index. HOMA-IR: Homeostatic Model Assessment of Insulin Resistance. HDL: high density lipoprotein cholesterol. LDL: low density lipoprotein cholesterol. Weight loss is measured over the follow-up period. Values are listed as mean ± standard deviation. “cm” is centimeters. “kg” is kilograms. “m” is meters. “mg” is milligrams. “dL” is deciliters. “%” is percent.
Discussion
In the first-of-its-kind study using a comprehensive metabolomics platform in three large cohorts, we have identified metabolites that, measured at baseline, were associated with improvements in insulin resistance, an important metabolic health measure, across behavioral, exercise and surgical weight loss interventions in individuals with obesity. Specifically, we found that higher baseline levels of complex triglyceride lipid species, triacylglycerols and diacylglycerols, are associated with a more salutatory metabolic response across weight loss interventions. Perhaps more importantly, we identify metabolites that were associated with heterogeneity in improvement in insulin resistance depending on the type of weight loss intervention. Specifically, we found 14 amino acids, peptides, and analogues, measured at baseline, that were associated with differential response to weight loss intervention (N-acetyltryptophan, proline, ADMA, phenylacetylglutamine, NMMA, phenylacetylglutamine, tyrosine, hydroxyproline, N-alpha-acetylarginine, N6-acetyllysine, betaine, histidine, 2-aminooctanoate, and lysine; Supplemental Table 2). These metabolites have great potential in precision medicine for overweight/obese individuals, serving as baseline biomarkers that add to clinical models of metabolic response to weight loss interventions, and to help guide a personalized approach to weight loss intervention.
Most dietary fat is TAGs, which need to be broken down before absorption in the gut, then reassembled into circulating low and high-density lipoproteins (LDL/HDL). High levels of TAGs have been associated with atherosclerosis and stroke.[38] DAGs are precursors to TAGs that have themselves be associated with immune-independent mechanisms of developing insulin resistance and/or T2DM in muscle and liver tissues.[39,40]
Previous work has indicated that individual TAGs with lower carbon number (44-52 vs 54-60 carbons) and separately lower double-bond content (0-3 vs 4-12 double-bonds) are associated with a higher likelihood of developing T2DM (higher carbon number and higher double-bond content were neutral in effect towards likelihood of developing T2DM).[41] In the current study, we find individual TAGs with carbon numbers between 50 and 55 and double-bond count between two and three were associated with reduction in insulin resistance over an intervention for obesity time period. Other TAG species were neutral in effect toward insulin resistance or slight reduction in insulin resistance (Supplemental Figure 1 and 2). This may mean low carbon number, saturated TAGs that indicated one may develop T2DM in the previous study[41] may also indicate an obesity intervention will be less effective.
Of note, using a much less comprehensive metabolomic platform, we have previously observed branched chain amino acids (BCAA) to be associated with insulin resistance and that higher baseline levels are associated with a greater decrease in insulin resistance[42,43]. In this study, we find amino acid analogues (including BCAAs) to be heterogeneous among our cohorts. In the case of the individual BCAAs (valine, leucine, isoleucine), they show no association in our CBD surgical cohort, while being positively associated with reduction in insulin resistance in WLM and STRRIDE-PD. The low standard error in the CBD cohort causes the overall inverse-variance weighted meta-analysis of the three cohorts to be non-significant. It is know that gut bacteria can alter the bioavailability of BCAAs.[44] This may indicate that the microbiome is important to consider during exercise/behavioral obesity interventions and less so during surgical interventions perhaps due to antibiotic usage related to having a surgery.
Another item of note is although our top hit of N6,N6-dimethyllysine is relatively unknown in the literature, our second most significantly heterogeneous amino acid analogues, N-acetyltryptophan, demonstrated the same pattern as the BCAAs; it is also been shown to be associated with host-gut microbiota interactions in both blood and urine bio-specimens.[45–47] Namely that the amino acid tryptophan is modified into N-acetyltryptophan by the gut microbiota and then absorbed into the host human. This adds to our earlier statement that the microbiome is important to consider during exercise/behavioral obesity interventions and less so during surgical interventions. We would point to antibiotic usage related to having surgery “resetting” the microbiome after the baseline sample (used in this study to predict outcomes) has been collected as a plausible reason for this.
While this is the first study to compare a large number of metabolites measured at baseline across diverse weight loss interventions, the study has a few limitations. The included cohorts are prospective, but are observational and therefore causation of metabolite pathways on insulin resistance cannot be determined, although we note that these associations remained significant after adjustment for amount of weight loss and other important comorbidities. Further, these results highlight important metabolites that might be used in a prospective randomized biomarker-guided clinical trial of assignment to different weight loss interventions. Our study also primarily involves individuals of European and/or African ancestry and therefore has unclear implications for other ancestries.
We believe this work demonstrates the validity and utility of evaluating the blood metabolome when determining the proper obesity intervention for a patient in a precision medicine context. Our work demonstrates the potential value of measuring individual TAGs and the differentiating ability of amino acid analogues in deciding the best obesity intervention for an individual. Future biomarker-guided intervention studies are necessary to determine clinical utility.
Acknowledgments
NAB and SHS are funded by American Heart Association Strategically Focused Research Network 17SFRN33670990 and 17SFRN33700155. LCK, CBC, AAD, and SHS are funded by NHLBI 5R01HL127009. REG is funded by NIDDK 5R01DK081572.
Conflict of interest statement
NAB, LCK, CBC, AAD, REG, BL and LPS have no conflicts. NJP has grants to institution from Amgen and Regeneron/Sanofi; and performs consulting for Esperion. CBN, WEK and SHS have an unlicensed patent on a related research finding (US10317414B2). The other authors have declared that no conflict of interest exists.
Supporting information captions
Supplemental Table 1: HOMA-IR PC vs logMetabolite - Univariate Model - Analysis Includes all meta-analysis results for univariate model after filtering (see methods). Metabolite: metabolite name, N_Samples: number of samples, N_Studies: number of cohorts that had data for the metabolite (up to 3), Beta_Fixed: effect size from fixed effects meta-analysis, SE_Fixed: standard error from fixed effects meta-analysis, Zvalue_Fixed: z-score from fixed effects meta-analysis, Pvalue_Fixed: p-value from fixed effects meta-analysis, Beta_Random: effect size from random effects meta-analysis, SE_Random: standard error from random effects meta-analysis, Zvalue_Random: z-score from random effects meta-analysis, Pvalue_Random: p-value from from random effects meta-analysis, Q: Cochran q-test statistic, Q_df: Cochran q-test degrees of freedom, Q_Pvalue: Cochran q-test p-value, Tau2: tau-squared between-study variance, H: H-statistic, I2: I-squared statistic, WLM_GP1_Beta: Effect size within WLM, WLM_GP1_SE: standard error within WLM, WLM_GP1_Num: number of samples within WLM, StrridePD_Beta: effect size within STRRIDE-PD, StrridePD_SE: standard error within STRRIDE-PD, StrridePD_Num: Number of samples within STRRIDE-PD, CBD_Beta: effect size within CBD, CBD_SE: standard error within CBD, CBD_Num: number of samples within CBD, Method: LC-MS method used to measure metabolite, HMDB.ID…representative.ID.: HMDB ID for metabolite, super_class: HMDB metabolite taxonomy super class, class: HMDB metabolite taxonomy class, sub_class: HMDB metabolite taxonomy sub class, missingness: metabolite missingness rate, zeroness: metabolite rate of being zero value, CV: metabolite coefficient of variation, Pvalue_Adj_Fixed: FDR adjusted p-value from fixed effects meta-analysis, Pvalue_Adj_Random: FDR adjusted p-value from random effects meta-analysis.
Supplemental Table 2: HOMA-IR PC vs logMetabolite - Full Model - Analysis Includes all meta-analysis results for full model after filtering (see methods). Same columns as Supplemental Table 1.
Supplemental Table 3: GSEA HOMA-IR PC Taxonomy Subclass Results Includes all Metabolite Set Analysis of univariate model meta-analysis results for the 22 metabolite sets. Pathway: name of metabolite set, pval: p-value from GSEA test, padj: FDR adjusted p-value, ES: enrichment score, NES: normalized enrichment score, nMoreExtreme: number of 1 million permutation that were more extreme than data, size: number of metabolites in metabolite set.
Supplemental Table 4: GSEA HOMA-IR PC Heterogeneity Taxonomy Subclass Results Includes all Heterogeneity Metabolite Set Analysis of full model meta-analysis results for the 22 metabolite sets. Same columns as Supplemental Table 3.
Supplemental Figure 1: HOMA-IR PC logMetabolite Analysis - Univariate Model - Triradylcglycerols - Carbon Downsloping Plot - Sig Plot of TAG metabolite effect size from random effects meta-analysis of univariate model vs number of carbon atom in the TAG.
Supplemental Figure 2: HOMA-IR PC logMetabolite Analysis - Univariate Model - Triradylcglycerols - Bond Downsloping Plot - Sig Plot of TAG metabolite effect size from random effects meta-analysis of univariate model vs number of double bonds in the TAG.