Assessment of deep learning and transfer learning for cancer prediction based on gene expression data
Abstract Background: Machine learning is now a standard tool for cancer prediction based on gene expression data. However, deep learning…
Phenotype prediction
Deep GONet: self-explainable deep neural network based on Gene Ontology for phenotype prediction from gene expression data
Abstract Background: With the rapid advancement of genomic sequencing techniques, massive production of gene expression data is becoming possible, which…
Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data
Abstract Background: The ability to confidently predict health outcomes from gene expression would catalyze a revolution in molecular diagnostics. Yet,…